snudda.neurons.neuron_model¶

Based on BluePyOpt exampel code by Werner van Geit, modified by Johannes Hjorth

snudda.neurons.neuron_model.create(param_config=None, morph_file=None, mechanisms_file=None, cell_name='Unknown')[source]¶: Create cell model

snudda.neurons.neuron_model.define_mechanisms(mechanism_config=None)[source]¶: Define mechanisms

snudda.neurons.neuron_model.define_morphology(replace_axon=True, morph_file=None)[source]¶: Define morphology. Handles SWC and ASC.

snudda.neurons.neuron_model.define_parameters(parameter_config=None)[source]¶: Define parameters

snudda.neurons.neuron_model.find_dend_compartment(neuron, synapse_xyz, loc_type, sim)[source]¶: Locate where on dend sections each synapse is