snudda.utils.reposition_neurons

class snudda.utils.reposition_neurons.RepositionNeurons(position_file)

Reposition neurons in the network file.

Constructor.

Parameters

position_file – network position file

close()

Close file.

place(neuron_id, position, rotation=None, verbose=True)

Reposition neuron neuron_id to position with rotation.

Parameters

• neuron_id – Neuron ID affected

• position – New position of neuron

• rotation – New rotatoin of neuron

• verbose – Print info?

set_modulation_id(neuron_id, modulation_id)

Set modulationID for neuron with neuron_id (neuron_id = None means all neurons)

set_modulation_key(neuron_id, modulation_key)

Set modulationKey for neuron with neuron_id (neuron_id = None means all neurons)

set_morphology_id(neuron_id, morphology_id)

Set morphologyID for neuron with neuron_id (neuron_id = None means all neurons)

set_morphology_key(neuron_id, morphology_key)

Set morphologyKey for neuron with neuron_id (neuron_id = None means all neurons)

set_parameter_id(neuron_id, parameter_id)

Set parameterID for neuron with neuron_id (neuron_id = None means all neurons)

set_parameter_key(neuron_id, parameter_key)

Set parameterKey for neuron with neuron_id (neuron_id = None means all neurons)