snudda.detect.project

class snudda.detect.project.SnuddaProject(network_path, snudda_data=None, rng=None, random_seed=None, h5libver=None)

Adds projections between neurons, useful for connecting different regions with long range connections.

Constructor.

Parameters

• network_path – Path to network directory

• rng – Numpy random stream

• random_seed – Random seed

• h5libver – Version of hdf5 driver to use

connect_projection_helper(pre_neuron_type, post_neuron_type, connection_info)

Helper function for project.

Parameters

• pre_neuron_type – Type of presynaptic neuron

• post_neuron_type – Type of postsynaptic neuron

• connection_info – Connection info

project(write=True)

Create projections between neurons.

read_neuron_positions()

Reads in neuron positions from network-neuron-positions.hdf5

read_prototypes()

Reads in neuron prototypes. Simplified version of what same function in detect.py does.

write()

Writes projection data to file.